Nextflow Blog

This document provides a step-by-step guide to setting up a Nextflow development environment on Windows 10.

A step-by-step guide to configure Nextflow with Git hosting solutions.

Resources for learning Nextflow: 2022 Revision

Join us to receive insights, resources and connect with the community first hand.

Software development is a constantly evolving, this post will summarise the major changes in the evolution of the framework over the next 12 to 18 months.

Submit a talk or poster abstract for the Nextflow Summit 2022!

Deploy Nextflow pipelines at scale with new the Google Cloud Batch compute service.

With the first round of the CZI Nextflow / nf-core mentorship now complete, we look back at the success of the program so far.

Powerful autocomplete for Nextflowin your command line interface with Fig.

Learn about Wave, an exciting new container provisioning and augmentation service that is fully integrated with the Nextflow and Nextflow Tower ecosystems. Wave will change the way you think about provisioning and managing containers!

Catch up on exciting developments from this year’s Nextflow Summit held in Barcelona

A guide to analysis of dump-hashes for troubleshooting caching behavior.

We've talked about deploying Nextflow pipelines with Google Cloud Batch in the past. Join us again for an extended and updated version

An updated compilation of the best Nextflow learning resources for 2023.

It seems that Kubernetes is everywhere we look! Nextflow users increasingly see K8s as a viable compute environment for their bioinformatic pipelines. In this article, Ben Sherman, Seqera Lab’s master of all things Kubernetes, details recent improvements to the Nextflow/Kubernetes integration.

With the second round of the mentorship program now complete, we celebrate the success of the most recent cohort of mentors and mentees.

An overview of the March 2023 Nextflow/nf-core training and hackathon events

Exploring the pros and cons of various file systems and cloud object stores for your Nextflow pipeline

Learn how to deploy and manage Nextflow pipelines with HPC workload managers.

A Nextflow retrospective describing ten years of community innovation

Helpful tips for troubleshooting out-of-memory errors in containerized execution environments.

Seqera partnership with universities to help students to learn Nextflow

We're excited to welcome Geraldine to Seqera as Lead Developer Advocate to help the Nextflow community in the USA grow and thrive!

We are excited to announce the launch of the Nextflow Ambassador Program, a worldwide initiative designed to foster collaboration, knowledge sharing, and community growth.

We are very excited to introduce the Seqera community forum - the new home of the Nextflow community!

The 2023 Summit was our best community event ever, drawing roughly 900 attendees across multiple channels.

With the third round of the mentorship program now complete, we celebrate the success of the most recent cohort of mentors and mentees.

There are several considerations when running large pipelines, including head job resources, storage, and virtual threads. In this in-depth article, Ben Sherman of Seqera explains how to optimize Nextflow for HPC and cloud at scale!

This is the first time we have a Nextflow workshop in Korea, and the feedback was amazing!

Bringing a splash of color to your pipeline monitoring.

Reproducibility is an important attribute of all good science. This is specially true in the realm of bioinformatics, where software is hopefully being constantly updated, and pipelines are ideally being maintained. This blog post covers nf-test in the nf-core context.

From a mentee in the Nextflow and nf-core mentorship program to a Senior Bioinformatician at ZS. Come and read this post as I share a bit of my journay in the Nextflow community.

In this blog post, James goes through a workshop he organized to demonstrate the efficiency and reproducibility Nextflow and nf-core can bring to analyze ancient environmental DNA.

The post highlights Robert Petit's involvement in the nf-core Mentorship Program, where he mentored individuals from Malawi, Chile, and Brazil in Nextflow and nf-core. Despite geographical barriers, his mentees successfully adapted their workflows, contributing to the open-source community. The narrative underscores the transformative impact of mentorship, encouraging participation in future rounds.

The post describes nf-schema, the former nf-validation nextflow plugin rewritten and improved.

The authors share in this post their experience while organizing a watch party for the Nextflow fundamentals training.

We've been recruiting more volunteers to the Nextflow Ambasador program and the applications close in June 14. This post is an official reminder for those interested in applying! ;)

A highlight of some of the goodies that have just been released in the 24.04 stable release of Nextflow 24.04 stable.

Kübra shares her first steps towards the establishment of a Nextflow community in Türkiye!

Cristina Tuñi reflects on a collaboration that emerged after her contact was found in the Nextflow Ambassador page.

It's time for a new cohort of Nextflow Ambassadors, with both new and continuing volunteers, to start!

This blog describes my journey from bash to nextflow community.

nf-boost is a Nextflow plugin that tackles storage issues by cleaning intermediate files on the fly, inspired by challenges faced with the GEMmaker pipeline. This blog post tells the backstory and what you can achieve with the plugin today.

Announcing a wave of improvements to the Community forum, including a sleeker design, better navigation and a one-size-fits-all category for support questions.

From managing complex pipelines to optimizing resource utilization, Nextflow offers a range of benefits that can streamline workflows and improve productivity for bioinformatics core groups.

From traditional scripting to streamlined automation: Dr. Pritam Kumar Panda shares his transformative journey with Nextflow, now a vital tool in his bioinformatics career at DKFZ, Heidelberg.

nf-cascade is a proof-of-concept Nextflow pipeline that demonstrates how multiple workflows, such as nf-core pipelines, can be seamlessly integrated and daisy-chained into a single workflow without modifying the original workflows.